Located in Nashville, Tennessee, and operating at a global crossroads of teaching, discovery and patient care, VUMC is a community of individuals who come to work each day with the simple aim of changing the world. It is a place where your expertise will be valued, your knowledge expanded and your abilities challenged. It is a place where your diversity — of culture, thinking, learning and leading — is sought and celebrated. It is a place where employees know they are part of something that is bigger than themselves, take exceptional pride in their work and never settle for what was good enough yesterday. Vanderbilt's mission is to advance health and wellness through preeminent programs in patient care, education, and research.
The Department of Infectious Disease at the Vanderbilt University Medical Center is seeking a Staff Scientist to contribute to projects that use a systems biology approach to study interactions between the human microbiome and myelodysplastic syndrome.
The incumbent will be primarily responsible for developing and implementing metagenomics analysis pipelines in a high-performance computing environment. The responsibilities include: assembly of metagenomic sequence data into microbial genomes, optimizing metagenomic assembly pipelines, prediction of metabolic capability from metagenomics data, and driving innovative analysis through the use of machine learning and -omics data integration techniques.
Contribute to bioinformatics pipelines for metagenomics and metatranscriptomics data analysis.
Make use of automated workflows for Next-generation sequencing (NGS) QC and analysis.
Process Metagenomics and RNA-seq datasets using established bioinformatics pipelines.
Participate in the innovation, design, and development of statistical and analytical solutions.
Work collaboratively with the multidisciplinary team of biologists and clinicians to implement data analysis and data integration solutions.
Education, Skills, and Experience:
Qualified candidates must have at least a doctorate degree in Bioinformatics, Computational Biology, Biostatistics, Computer Science, Biology or a related field.
A minimum of 5 years of experience in bioinformatics or statistical analysis is preferred.
Proficient in Unix, and a programming language such as Perl/Java/Python and shell scripting.
Able to work in a Linux computing environment
Strong experience in the following areas:
Understanding of bioinformatics principles, data analysis and integration styles.
Extensive experience in Next-Generation Sequencing data analysis.
Hands on experience in high-throughput RNA-seq, Metagenomics, and/or Metabolomics data analysis.
Experience in building bioinformatics pipelines for genome assembly and annotation.
Ability to perform root-cause analysis and work with a team of multidisciplinary scientists to drive problem resolution.
VUMC Recent Accomplishments
Because we are committed to providing the best in patient care, education and research, we are proud of our recent accomplishments:
US News & World Report: #1 Hospital in Tennessee, #1 Health Care Provider in Nashville, #1 Audiology ( Bill Wilkerson Center ), 12 adult and 10 pediatric clinical specialties ranked among the nation's best, #15 Education and Training
Truven Health Analytics: among the top 50 cardiovascular hospitals in the U.S.
Becker's Hospital Review: one of the "100 Greatest Hospitals in America"
The Leapfrog Group: grade "A" in Hospital Safety Score
National Institutes of Health: among the top 10 grant awardees for medical research in the US
Magnet Recognition Program: Vanderbilt nurses are the only group honored in Tennessee
Nashville Business Journal: Middle Tennessee's healthiest employer
American Hospital Association: among the 100 "Most Wired" medical systems in the US
Vanderbilt University Medical Center is home to Vanderbilt University Hospital, The Monroe Carell Jr. Children’s Hospital at Vanderbilt, the Vanderbilt Psychiatric Hospital and the Vanderbilt Stallworth Rehabilitation Hospital. These hospitals experienced more than 61,000 inpatient admissions during fiscal year 2015. Vanderbilt’s adult and pediatric clinics treated nearly 2 million patients during this same period.Vanderbilt University Hospital and the Monroe Carell Jr. Children’s Hospital at Vanderbilt are recognized again this year by U.S. News & World Report’s Best Hospitals as among the nation’s best with 18 nationally ranked specialties. Vanderbilt University Medical Center is world renowned because of the innovation, work ethic and collegiality of its employees. From our health care advances to our compassionate care, Vanderbilt owes its accomplishments and reputation to staff and faculty who bring skill and drive and innovation to the medical center day after day. World-leading academic departments and comprehensive centers of excellence pursue scientific discoveries and transformational educational and clinical advances across the entire spectrum of health and disease.As th...e largest employer in middle Tennessee, we welcome those who are interested in ongoing development in a caring, culturally sensitive and professional atmosphere. Most of us spend so much of our lives at work, we want to be part of maintaining a workplace in which people support one another and encourage reaching for excellence. Many high-achieving employees stay at Vanderbilt because of the professional growth they experience and because of their appreciation of Vanderbilt’s benefits, public events and discussions, athletic opportunities, beautiful setting and, above all, sense of community and purpose.Vanderbilt and its employees share a set of mutual expectations that have been created with productivity, legality, fairness and safety always in mind. We believe that our investment in training and compensating employees multiplies in value when we enable individuals to deliver their best performance for the benefit of us all.